Species Composition of Microbiota in City Buses
https://doi.org/10.35627/2219-5238/2021-337-4-10-17
Abstract
Introduction: Regulatory documents of the Russian sanitary legislation provide no standardization of microbiological indicators for urban public transportation. At the same time, extensive studies of public transport microbiome conducted in dif ferent countries demonstrated that the external environment (stations and platforms) and the interior of vehicles contain a large number of various microorganisms, the number of which is independent of air temperature, route duration, or the number of passengers. The objective of our work was to study the species composition of microbiota in urban buses and to assess its structure using methods of synecological and epidemiological analysis. Methods: We analyzed wipe samples from generally accessible bus interior surfaces. In total, 41 buses of 16 routes from three conditional groups (“Nagornaya” (Upland), “Zarechnaya” (Transverse) and “Interdistrict”) were examined. We applied methods of classical bacteriology, MALDITOF mass spectrometry for microor ganism identification, and synecological analysis. Results and discussion: We identified 85 types of microorganisms, 15 of which were found in all groups of routes. The bus microbiota followed the same ecological laws as natural microbiocenoses. The greatest number of species was represented by genera Staphylococcus (16), Acinetobacter (11), Bacillus (11), Pseudomonas (8), and Pantoea (5). The majority of identified microorganisms belonged to genera Acinetobacter, Enterobacter, and Pantoea. Among 15 species of micro organisms “common” to three groups of buses, 60 % were representatives of human microbiota. Microorganisms were found in large quantities on fabric seat backs (up to 18,600 CFU/cm3), seat back handles (up to 76,500 CFU/cm3), leather loopholders (up to 6,400 CFU/cm3), and visually dirty surfaces (11,200 CFU/cm3). Conclusions: Our findings indicate the need to standardize micro biological indicators and develop guidelines for monitoring the efficiency of disinfection of interiors of public passenger vehicles.
About the Authors
I. V. BelovaRussian Federation
Irina V. Belova, Candidate of Medical Sciences, Leading Researcher, Laboratory of Human Microbiome and Means of Its Correction
71 Malaya Yamskaya Street, Nizhny Novgorod, 603950
A. G. Tochilina
Russian Federation
Anna G. Tochilina, Candidate of Biological Sciences, Senior Researcher, Laboratory of Human Microbiome and Means of Its Correction
71 Malaya Yamskaya Street, Nizhny Novgorod, 603950
I. V. Solovyeva
Russian Federation
Irina V. Solovyeva, D.Biol.Sc., Associate Professor, Leading Researcher, Head of the Microbiology Laboratory
71 Malaya Yamskaya Street, Nizhny Novgorod, 603950
D. B. Gelashvili
Russian Federation
David B. Gelashvili, D.Biol.Sc., Professor, Department of Ecology
Nizhny Novgorod, 603950
N. I. Zaznobina
Russian Federation
Nataly I. Zaznobina, Candidate of Biological Sciences, Associate Professor, Department of Ecology
Nizhny Novgorod, 603950
V. A. Zhirnov
Russian Federation
Vladimir A. Zhirnov, Candidate of Biological Sciences, Researcher, Laboratory of Human Microbiome and Means of Its Correction
71 Malaya Yamskaya Street, Nizhny Novgorod, 603950
S. B. Molodtsova
Russian Federation
Svetlana B. Molodtsova, Researcher, Laboratory of Human Microbiome and Means of Its Correction
71 Malaya Yamskaya Street, Nizhny Novgorod, 603950
References
1. Belov AB, Kulikalova ES. Sapronoses: ecology of infection agents, epidemiology, terminology and classification. Epidemiologiya i Vaktsinoprofilaktika. 2016;15(1):5–16. (In Russian). doi: 10.31631/20733046-2016-15-1-5-16
2. Hubálek Z. Emerging human infectious diseases: anthroponoses, zoonoses, and sapronoses. Emerg Infect Dis. 2003;9(3):403–404. doi: 10.3201/eid0903.020208
3. Hubálek Z, Rudolf I. Microbial Zoonoses and Sapronoses. Dordrecht: Springer Publ, 2011. doi: 10.1007/978-90-481-9657-9
4. Kuris AM, Lafferty KD, Sokolow SH. Sapronosis: a distinctive type of infectious agent. Trends Parasitol. 2014;30(8):386–393. doi: 10.1016/j.pt.2014.06.006
5. Xu B, Hao J. Air quality inside subway metro indoor environment worldwide: A review. Environ Int. 2017; 107:33–46. doi: 10.1016/j.envint.2017.06.016
6. Fujiyoshi S, Tanaka D, Maruyama F. Transmission of airborne bacteria across built environments and its measurement standards: A review. Front Microbiol. 2017;8:2336. doi: 10.3389/fmicb.2017.02336
7. Dybwad M, Granum PE, Bruheim P, Blatny JM. Characterization of airborne bacteria at an underground subway station. Appl Environ Microbiol. 2012;78(6):1917– 1929. doi: 10.1128/AEM.07212-11
8. HsuT, JoiceR, VallarinoJ, Abu-AliG, HartmannEM, Shafquat A, et al. Urban transit system microbial communities differ by surface type and interaction with humans and the environment. mSystems. 12016;1(3):e00018–16. doi: 10.1128/mSystems.00018-16
9. Hospodsky D, Qian J, Nazaroff WW, Yamamoto N, Bibby K, Rismani-Yazdi H, et al. Human occupancy as a source of indoor airborne bacteria. PLoS One. 2012;7(4):e34867. doi: 10.1371/journal.pone.0034867
10. Brusina EB, Ryichagov IP. [Epidemiology of In-hospital Septic Infection in Surgery]. Novosibirsk: Nauka Publ., 2006. (In Russian).
11. Kulikalova ES, UrbanovichLYa, SappoSG, MironovaLV, MarkovEYu, Mal’nikVV. Cholera vibrio biofilm: production, characterization and role in reservation of causative agent in water environment. Zhurnal Mikrobiologii, Epidemiologii i Immunobiologii. 2015;(1):3–11. (In Russian).
12. Andryukov BG, Somova LM, Timchenko NF. Evolution of the sapronosis notion and transformation of the environmental concept of parasitism in infectology. Zhurnal Mikrobiologii, Epidemiologii i Immunobiologii. 2017;(5):119–126. doi: 10.36233/0372-9311-2017-5119-126
13. Belov AB. [Environmental aspects of epidemiological surveillance of hospital infections]. In: Sepsis. Issues of Сlinical Pathophysiology, Epidemiology, diagnosis and intensive Care: Proceeding of the Interregional Scientific and Practical Conference. Kemerovo: Kuzbassvuzizdat Publ., 2006:18–27. (In Russian).
14. Brusina EB. Epidemiology of healthcare-associated infection, coused by sapronoses group pathogens. Epidemiologiya i Vaktsinoprofilaktika. 2015;14(2):50–56. (In Russian). doi: 10.31631/2073-3046-2015-14-2
15. Conceição T, Diamantino F, Coelho C, Aires-deSousa M. Contamination of public buses with MRSA in Lisbon, Portugal: a possible transmission route of major MRSA clones within the community. PLoS One. 2013;8(11):e77812. doi: 10.1371/journal.pone.0077812
16. Tikhonov VV, Nikolaeva OV, Pilgun PA. Quantity of airborne microorganisms in public transport of Moscow in winter period. Gorodskie Issledovaniya i Praktiki. 2018;3(3):36–47. (In Russian). doi: 10.17323/usp33201836-47
17. AfshinnekooE, MeydanC, ChowdhuryS, JaroudiD, BoyerC, BernsteinN, et al. Geospatial resolution of human and bacterial diversity with city-scale metagenomics. Cell Syst. 2015;1(1):72–87. doi: 10.1016/j.cels.2015.01.001
18. The MetaSUB International Consortium, Mason C, Afshinnekoo E, Ahsannudin S, Ghedin E, Read T, Fraser C, et al. The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report. Microbiome. 2016;4(24):1–14. doi: https://doi.org/10.1186/s40168016-0168-z
19. Klimenko NS, Tyakht AV, Toshchakov SV, Shevchenko MA, Korzhenkov AA, Afshinnekoo E et al. Cooccurrence patterns of bacteria within microbiome of Moscow subway. Comput Struct Biotechnol J. 2020; 18:314–322. doi: 10.1016/j.csbj.2020.01.007
20. Garza DR, Dutilh BE. From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems. Cell Mol Life Sci. 2015;72(22):4287–308. doi: 10.1007/s00018-015-2004-1
21. Neelakanta G, Sultana H. The use of metagenomic approaches to analyze changes in microbial communities. Microbiol Insights. 2013;6:37–48. doi: 10.4137/MBI. S10819
22. RobertsonCE, BaumgartnerLK, HarrisJK, PetersonKL, StevensMJ, FrankDN, et al. Culture-independent analysis of aerosol microbiology in a metropolitan subway system. Appl Environ Microbiol. 2013;79(11):3485–93. doi: 10.1128/AEM.00331-13
23. Dingle TC, Butler-Wu SM. MALDI-TOF mass spectrometry for microorganism identification. Clin Lab Med. 2013;33(3):589–609. doi: 10.1016/j.cll.2013.03.001
24. Singhal N, Kumar M, Kanaujia PK, Virdi JS. MALDITOF mass spectrometry: an emerging technology for microbial identification and diagnosis. Front Microbiol. 2015;6:791. doi: 10.3389/fmicb.2015.00791
25. LiY, ShanM, ZhuZ, MaoX, YanM, Chen Y, et al. Application of MALDI-TOF MS to rapid identification of anaerobic bacteria. BMC Infect Dis. 2019;19(1):941. doi: 10.1186/s12879-019-4584-0
26. Strejcek M, Smrhova T, Junkova P, Uhlik O. Whole-cell MALDI-TOF MS versus 16S rRNA gene analysis for identification and dereplication of recurrent bacterial isolates. Front Microbiol. 2018;9:1294. doi: 10.3389/ fmicb.2018.01294
Review
For citations:
Belova I.V., Tochilina A.G., Solovyeva I.V., Gelashvili D.B., Zaznobina N.I., Zhirnov V.A., Molodtsova S.B. Species Composition of Microbiota in City Buses. Public Health and Life Environment – PH&LE. 2021;(4):10-17. (In Russ.) https://doi.org/10.35627/2219-5238/2021-337-4-10-17