Retrospective Analysis of the Cholera Situation in the Donbass Region, Zaporozhye and Kherson Regions
https://doi.org/10.35627/2219-5238/2023-31-11-82-93
Abstract
Introduction: The review presents the results of a retrospective analysis of the incidence of cholera and the prevalence of Vibrio cholerae in environmental media on the territory of the Donbass Region, Zaporozhye and Kherson Regions.
Objective: To do a retrospective analysis of the cholera epidemiological situation in the Donbass Region, Zaporozhye and Kherson regions, and border areas during the seventh pandemic and to assess risks of importation and spread of the disease.
Materials and methods: We examined topical articles published in peer-reviewed journals and data of the Reference Center for Cholera Monitoring for 1970–2023. The SNP analysis used whole genome sequences of V. cholerae O1 strains, NCBI and ENA databases, UPGMA and ML algorithms, author’s software, and MEGA 5.
Results: We established historic cholera outbreaks in the Donbass Region (Donetsk and Lugansk People’s Republics, former Donetsk and Lugansk regions), Zaporozhye and Kherson regions caused by the infection imported from endemic countries and its spread by water and food. The highest cholera incidence rates were registered in the 1970s and 1990s; the most recent outbreak was documented in the year 2011. In 1989–2022, 490 V. cholerae O1 strains, including 51 toxigenic ones, were isolated from water bodies in the Donetsk People’s Republic (the former Donetsk Region), 8 strains (2) in the Lugansk People’s Republic (the former Lugansk Region), 183 (6) in Zaporozhye, and 66 (51) in the Kherson Region. Toxigenic strains represented a heterogeneous group due to multiple imports of the pathogen. We revealed similarity of genotypes of V. cholerae strains isolated from environmental media in certain areas over several years, which indicates the presence of climatic and social conditions for preservation and development of local populations of cholera vibrios.
Conclusion: The current cholera situation in the Donbass Region, Zaporozhye and Kherson regions is stable. Due to the present-day emergency and infrastructure conditions, high risks of cholera importation from endemic and adjacent territories and spread of this infectious disease through water persist, thus necessitating regular and systematic monitoring of cholera in these regions and strict implementation of all measures envisaged for type I territories in terms of epidemic manifestations of cholera.
About the Authors
A. Yu. PopovaRussian Federation
Anna Yu. Popova, Dr. Sci. (Med.), Prof., Honored Doctor of the Russian Federation, Head; Head of the Department of Organization of Sanitary and Epidemiological Service
A. K. Noskov
Russian Federation
Aleksey K. Noskov, Cand. Sci. (Med.), Director
E. B. Ezhlova
Russian Federation
Elena B. Ezhlova, Cand. Sci. (Med.), Deputy Head
V. D. Kruglikov
Russian Federation
Vladimir D. Kruglikov, Dr. Sci. (Med.), Chief Researcher, Department of Microbiology of Cholera and Other Acute Intestinal Infections
L. V. Mironova
Russian Federation
Liliya V. Mironova, Dr. Sci. (Med.), Deputy Director on Scientific and Laboratory Diagnostic Work
E. V. Monakhova
Russian Federation
Elena V. Monakhova, Dr. Sci. (Biol.), Chief Researcher, Department of Microbiology of Cholera and Other Acute Intestinal Infections
O. S. Chemisova
Russian Federation
Olga S. Chemisova, Cand. Sci. (Med.), Leading Researcher, Acting Deputy Director for Scientific and Experimental Work
O. A. Podoynitsina
Russian Federation
Oksana A. Podoynitsina, Cand. Sci. (Biol.), Senior Researcher, Department of Microbiology of Cholera and Other Acute Intestinal Infections
Zh. Yu. Khunkheeva
Russian Federation
Zhanna Yu. Khunkheeva, bacteriologist, Cholera Laboratory
A. S. Vodopyanov
Russian Federation
Alexey S. Vodopyanov, Cand. Sci. (Med.), Leading Researcher, Laboratory of Molecular Biology of Naturally Occurring and Zoonotic Infections
Yu. P. Galachyants
Russian Federation
Yuri P. Galachyants, Cand. Sci. (Biol.), Researcher, Department of Scientific and Educational Support
References
1. Noskov AK, Kruglikov VD, Moskvitina EA, et al. Cholera: Analysis and assessment of epidemiological situation in the world and in Russia (2013–2022). Forecast for 2023. Problemy Osobo Opasnykh Infektsiy. 2023;(1):56-66. (In Russ.) doi: 10.21055/0370-1069-2023-1-56-66
2. Onishchenko GG, Lomov YuM, Moskvitina EA, et al. Cholera caused by Vibrio cholerae O1 ctxABtcpA+. Zhurnal Mikrobiologii, Epidemiologii i Immunobiologii. 2007;(1):23-29. (In Russ.)
3. Lizárraga-Partida ML, Quilici ML. Molecular analyses of Vibrio cholerae O1 clinical strains, including new nontoxigenic variants isolated in Mexico during the Cholera epidemic years between 1991 and 2000. J Clin Microbiol. 2009;47(5):1364-1371. doi: 10.1128/JCM.00720-08
4. Islam A, Labbate M, Djordjevic SP, et al. Indigenous Vibrio cholerae strains from a non-endemic region are pathogenic. Open Biol. 2013;3(2):120181. doi: 10.1098/rsob.120181
5. Titova SV, Monakhova EV. Potential danger of nontoxigenic Vibrio cholerae strains containing genes for toxin-coregulated pili adhesion. Epidemiologiya i Infektsionnye Bolezni. Aktual’nye Voprosy. 2016;(5):65-72. (In Russ.)
6. Wang H, Yang C, Sun Z, et al. Genomic epidemiology of Vibrio cholerae reveals the regional and global spread of two epidemic non-toxigenic lineages. PLoS Negl Trop Dis. 2020;14(2):e0008046. doi: 10.1371/journal.pntd.0008046
7. Bankevich A, Nurk S, Antipov D, et al. SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19(5):455-477. doi: 10.1089/cmb.2012.0021
8. Vodop’yanov AS, Pisanov RV, Vodop’yanov SO, et al. Molecular epidemiology of Vibrio cholerae – development of the algorithm for data analysis of whole genome sequencing. Epidemiologiya i Infektsionnye Bolezni. 2016;21(3):146-152. (In Russ.) doi: 10.17816/EID40917
9. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28(10):2731-2739. doi: 10.1093/molbev/msr121
10. Yan H, Pang B, Lu X, et al. Cholera caused by a new clone of serogroup O1 Vibrio cholerae – Beijing Municipality, China, June 2021. China CDC Wkly. 2022;4(2):31-32. doi: 10.46234/ccdcw2021.279
11. Onischenko GG, Popova AYu, Moskvitina EA, et al. Determination of types of epidemic manifestations of cholera in regions of the Crimea Federal District (Republic of Crimea). Zhurnal Mikrobiologii, Epidemiologii i Immunobiologii. 2015;(6):37-43. (In Russ.)
12. Clark CG, Kravetz AN, Alekseenko VV, Krendelev YuD, Johnson WM. Microbiological and epidemiological investigation of cholera epidemic in Ukraine during 1994 and 1995. Epidemiol. Infect. 1998;121(1):1–13. doi: 10.1017/s0950268898008711
13. Clark CG, Kravetz AN, Dendy C, Wang G, Tyler KD, Johnson WM. Investigation of the 1994-5 Ukrainian Vibrio cholerae epidemic using molecular methods. Epidemiol Infect. 1998;121(1):15-29. doi: 10.1017/s0950268898008814
14. Monakhova EV, Smolikova LM, Bozhko NV. PCR detection of the type III secretion system (TTSS) genes and other pathogenicity/persistence factors in Vibrio cholerae of different serogroups. Epidemiologiya i Infektsionnye Bolezni. 2010;15(6):20-25. (In Russ.) doi: 10.17816/EID40460
15. Alekseyenko VV. [Problem of cholera in Ukraine.] Infektsiyni Khvorobi. 2008;(4):5-12. (In Ukrainian.)
16. Savelieva IV, Tikhonov SN, Saveliev VN, et al. Retrospective analysis of biological and molecular-genetic properties of strains – causative agents of cholera – isolated in Ukraine in 1994–2011. Zhurnal Mikrobiologii, Epidemiologii i Immunobiologii. 2017;(1):49-55. (In Russ.) doi: 10.36233/0372-9311-2017-1-49-55
17. Domashenko ON, Belomerya TA, Martynova NV, et al. Cholera in Azov area. Zhurnal Infektologii. 2015;7(2):9297. (In Russ.)
18. Belomerya TA, Daragan GN, Denisenko VI, et al. Organization of epidemic control activities by localization of cholera in the Donetsk region. Meditsinskiy Vestnik Yuga Rossii. 2014;(2):118-122. (In Russ.)
19. Kuleshov KV, Kostikova A, Pisarenko SV, et al. Comparative genomic analysis of two isolates of Vibrio cholerae O1 Ogawa El Tor isolated during outbreak in Mariupol in 2011. Infect Genet Evol. 2016;44:471-478. doi: 10.1016/j.meegid.2016.07.039
20. Smirnova NI, Krasnov YM, Agafonova EY, Shchelkanova EY, Alkhova ZV, Kutyrev VV. Whole-genome sequencing of Vibrio cholerae O1 El Tor strains isolated in Ukraine (2011) and Russia (2014). Genome Announc. 2017;5(8):e0164016. doi: 10.1128/genomeA.01640-16
21. Monakhova EV, Ghosh A, Mutreja A, Weill FX, Ramamurthy T. Endemic cholera in India and imported cholera in Russia: What is common? Problemy Osobo Opasnykh Infektsiy. 2020;(3):17-26. doi: 10.21055/0370-1069-20203-17-26
22. Smirnova NI, Rybal’chenko DA, Plekhanov NA, Lozovsky YuV, Fedorov AV, Kutyrev VV. New genetic variants of cholera agent and their distribution in epidemic countries and Russia. Molekulyarnaya Genetika, Mikrobiologiya i Virusologiya. 2023;41(1):10-17. (In Russ.) doi: 10.17116/molgen20234101110
23. Mutreja A, Kim DW, Thomson NR, et al. Evidence for several waves of global transmission in the seventh cholera pandemic. Nature. 2011;477(7365):462-465. doi: 10.1038/nature10392
24. Hu D, Liu B, Feng L, et al. Origins of the current seventh cholera pandemic. Proc Natl Acad Sci USA. 2016;113(48):E7730-E7739. doi: 10.1073/pnas.1608732113
25. Luo Y, Octavia S, Jin D, et al. US gulf-like toxigenic O1 Vibrio cholerae causing sporadic cholera outbreaks in China. J Infect. 2016;72(5):564-572. doi: 10.1016/j.jinf.2016.02.005
Review
For citations:
Popova A.Yu., Noskov A.K., Ezhlova E.B., Kruglikov V.D., Mironova L.V., Monakhova E.V., Chemisova O.S., Podoynitsina O.A., Khunkheeva Zh.Yu., Vodopyanov A.S., Galachyants Yu.P. Retrospective Analysis of the Cholera Situation in the Donbass Region, Zaporozhye and Kherson Regions. Public Health and Life Environment – PH&LE. 2023;31(11):82-93. (In Russ.) https://doi.org/10.35627/2219-5238/2023-31-11-82-93